What distro/OS are you using at what version?
Do you have the closed source nvidia drivers installed?
This is the Quake3 engine, so your machine specs are well above suggested. You should be getting great frame rates.
You can also try "Ctrl-Alt-Backspace", see if that kills it (this command takes down Xwindows, brutally. Not suggested for anything besides normal use).
Also, if you've installed the drivers, you can check to make sure that 3d acceleration is enabled by doing this:
First, fire up Xwindows and open a terminal emulator (rxvt or xterm), then run this command:
$ glxinfo | grep direct
You should see a line or two which says "direct rendering:", and then either "yes" or "no". If it says "yes", your 3d acceleration is on and running.
Jeff